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ITR late filing penalty and fees on the Income Tax e-filing portal: 6 things to know

Upstox

2 min read | Updated on September 13, 2025, 10:45 IST

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SUMMARY

If you miss the income tax return (ITR) filing deadline, you won’t be able to carry forward losses from certain sources, like business and capital gains.

penalty for late filing ITR, income tax e-filing portal

Belated returns, under Section 139(4) of the Income Tax Act, attract late filing penalties of up to ₹5,000.

The income tax return (ITR) filing deadline for non-audit cases is just four days away now. For the assessment year 2025-26 (AY26), the deadline for filing ITR was extended to September 15 due to many changes in the ITR forms. Many people are waiting for the deadline to be extended again, but the chances of it happening are fairly low.
If you file your ITR on the Income Tax e-filing portal after the deadline, you’re practically inviting penalties and charges. Here are the key things to know about the penalty for filing your ITR late:
  • If your annual income is below ₹5 lakh, and you file your ITR after the deadline, a late fee of ₹5,000 would be applicable.
  • If your income exceeds ₹5 lakh, the penalty would be ₹5,000.
  • If you file ITR after the due date, you won’t be eligible to claim certain deductions, including under Section 10A, 10B, 80-1A, 80-IB, 80-IC, 80-ID and 80-IE.
  • Taxpayers will also have to pay an interest of 1% every month (or part of the month) on the unpaid tax under Section 234A.
  • The refund processing will also be delayed if you file your ITR after the deadline.
  • Lastly, you won’t be able to carry forward losses from certain sources, like business and capital gains, in case you miss the ITR filing deadline.

What to do if you miss the ITR filing deadline?

In case you miss the deadline, you can file a belated return before December 31, 2025. However, a late filing penalty would be applicable on the belated return under Section 234F.

Belated returns, under Section 139(4) of the Income Tax Act, attract late filing penalties of up to ₹5,000 based on your annual income and interest on the unpaid tax.

Further, if you miss even the belated return deadline, you can file an Updated Return (ITR-U) under section 139(8A) within 48 months from the end of the relevant assessment year. However, this is allowed only under specified conditions and attracts additional tax liability.

It’s better to file your return before the due date to avoid penalties and any potential ITR notice.

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About The Author

Upstox
Upstox News Desk is a team of journalists who passionately cover stock markets, economy, commodities, latest business trends, and personal finance.